Henrik Bjørn Nielsen

Henrik Bjørn Nielsen

Associate professor

DTU SYSTEMS BIOLOGY
Department of Systems Biology

Center for Biological Sequence Analysis
Microbiome Systems Biology

Technical University of Denmark

Kemitorvet

Building 208, room 017

2800 Kgs. Lyngby

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2016
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Colonic transit time relates to bacterial metabolism and mucosal turnover in the human gut

Roager, Henrik Munch ; Hansen, Lea Benedicte Skov ; Bahl, Martin Iain ; Frandsen, Henrik Lauritz ; Carvalho, Vera ; Gøbel, Rikke J. ; Dalgaard, Marlene Danner ; Sparholt, Morten ; Vestergaard, Henrik ; Hansen, Torben ; Sicheritz-Ponten, Thomas ; Nielsen, Henrik Bjørn ; Pedersen, Oluf ; Lauritzen, Lotte ; Kristensen, Mette ; Gupta, Ramneek ; Licht, Tine Rask
Presented at:
10th Joint Symposium INRA-Rowett 2016: Gut Microbiology, 2016, Clermont-Ferrand

Type: Conference abstract for conference (Peer reviewed)

Status: Published     |    Year: 2016

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Capturing One of the Human Gut Microbiome's Most Wanted

Jeraldo, Patricio ; Hernandez, Alvaro ; Nielsen, Henrik Bjørn ; Chen, Xianfeng ; White, Bryan A. ; Goldenfeld, Nigel ; Nelson, Heidi ; Alhquist, David ; Boardman, Lisa ; Chia, Nicholas
in journal: Frontiers in Microbiology (ISSN: 1664-302X) (DOI: http://dx.doi.org/10.3389/fmicb.2016.00783), vol: 7, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2016     |    DOI: http://dx.doi.org/10.3389/fmicb.2016.00783

2015
 

Predicting facial characteristics from complex polygenic variations

Fagertun, Jens ; Wolffhechel, Karin Marie Brandt ; Pers, Tune ; Nielsen, Henrik Bjørn ; Gudbjartsson, Daniel ; Stefansson, Hreinn ; Stefansson, Kari ; Paulsen, Rasmus Reinhold ; Jarmer, Hanne Østergaard
in journal: Forensic Science International: Genetics (ISSN: 1872-4973) (DOI: http://dx.doi.org/10.1016/j.fsigen.2015.08.004), vol: 19, pages: 263-268, 2015

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2015     |    DOI: http://dx.doi.org/10.1016/j.fsigen.2015.08.004

 

A retrospective metagenomics approach to studying Blastocystis

Andersen, Lee O'Brien ; Bonde, Ida ; Nielsen, Henrik Bjørn ; Stensvold, Christen Rune
in journal: F E M S Microbiology Reviews (ISSN: 0168-6445) (DOI: http://dx.doi.org/10.1093/femsec/fiv072), vol: 91, issue: 7, 2015

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2015     |    DOI: http://dx.doi.org/10.1093/femsec/fiv072

 

A catalog of the mouse gut metagenome

Xiao, Liang ; Feng, Qiang ; Liang, Suisha ; Sonne, Si Brask ; Xia, Zhongkui ; Qiu, Xinmin ; Li, Xiaoping ; Long, Hua ; Zhang, Jianfeng ; Zhang, Dongya ; Liu, Chuan ; Fang, Zhiwei ; Chou, Joyce ; Glanville, Jacob ; Hao, Qin ; Kotowska, Dorota ; Colding, Camilla ; Licht, Tine Rask ; Wu, Donghai ; Yu, Jun ; Sung, Joseph Jao Yiu ; Liang, Qiaoyi ; Li, Junhua ; Jia, Huijue ; Lan, Zhou ; Tremaroli, Valentina ; Dworzynski, Piotr ; Nielsen, Henrik Bjørn ; Bäckhed, Fredrik ; Doré, Joël ; Le Chatelier, Emmanuelle ; Ehrlich, S. Dusko ; Lin, John C. ; Arumugam, Manimozhiyan ; Wang, Jun ; Madsen, Lise ; Kristiansen, Karsten
in journal: Nature Biotechnology (ISSN: 1087-0156) (DOI: http://dx.doi.org/10.1038/nbt.3353), vol: 33, issue: 10, pages: 1103-1108, 2015

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2015     |    DOI: http://dx.doi.org/10.1038/nbt.3353

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Early Divergent Strains of Yersinia pestis in Eurasia 5,000 Years Ago

Rasmussen, Simon ; Allentoft, Morten Erik ; Nielsen, Kasper ; Orlando, Ludovic ; Sikora, Martin ; Sjögren, Karl-Göran ; Pedersen, Anders Gorm ; Schubert, Mikkel ; Van Dam, Alex ; Kapel, Christian Moliin Outzen ; Nielsen, Henrik Bjørn ; Brunak, Søren ; Avetisyan, Pavel ; Epimakhov, Andrey ; Khalyapin, Mikhail Viktorovich ; Gnuni, Artak ; Kriiska, Aivar ; Lasak, Irena ; Metspalu, Mait ; Moiseyev, Vyacheslav ; Gromov, Andrei ; Pokutta, Dalia ; Saag, Lehti ; Varul, Liivi ; Yepiskoposyan, Levon ; Sicheritz-Pontén, Thomas ; Foley, Robert A ; Lahr, Marta Mirazón ; Nielsen, Rasmus ; Kristiansen, Kristian ; Willerslev, Eske
in journal: Cell (ISSN: 0092-8674) (DOI: http://dx.doi.org/10.1016/j.cell.2015.10.009), vol: 163, issue: 3, pages: 571-582, 2015

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2015     |    DOI: http://dx.doi.org/10.1016/j.cell.2015.10.009

 

Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota

Forslund, Kristoffer ; Hildebrand, Falk  ; Nielsen, Trine N. ; Falony, Gwen ; Le Chatelier, Emmanuelle ; Sunagawa, Shinichi ; Prifti, Edi ; Vieira-Silva, Sara ; Gudmundsdottir, Valborg ; Pedersen, Helle Krogh ; Arumugam, Manimozhiyan ; Kristiansen, Karsten ; Yvonne Voig, Anita ; Vestergaard, Henrik ; Hercog, Rajna ; Costea, Paul Igor ; Kultima, Jens Roat ; Li, Junhua ; Jørgensen, Torben ; Levenez, Florence ; Dore, Joël ; Nielsen, Henrik Bjørn ; Brunak, Søren ; Raes, Jeroen ; Hansen, Torben ; Wang, Jun ; Ehrlich, S. Dusko ; Bork, Peer ; Pedersen, Oluf
in journal: Nature (ISSN: 0028-0836) (DOI: http://dx.doi.org/10.1038/nature15766), vol: 528, issue: 7581, pages: 262-266, 2015

Type: Letter (Peer reviewed)

Status: Published     |    Year: 2015     |    DOI: http://dx.doi.org/10.1038/nature15766

2014
 

Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes

Nielsen, Henrik Bjørn ; Almeida, Mathieu ; Juncker, Agnieszka ; Rasmussen, Simon ; Li, Junhua ; Sunagawa, Shinichi ; Plichta, Damian Rafal ; Gautier, Laurent ; Pedersen, Anders Gorm ; Emmanuelle, Le Chatelier ; Pelletier, Eric ; Bonde, Ida ; Nielsen, Trine ; Manichanh, Chaysavanh ; Arumugam, Manimozhiyan ; Batto, Jean-Michel ; dos Santos, Marcelo Bertalan Quintanilha ; Blom, Nikolaj ; Borruel, Natalia ; Burgdorf, Kristoffer S. ; Boumezbeur, Fouad ; Casellas, Francesc ; Doré, Joël ; Dworzynski, Piotr ; Guarner, Francisco ; Hansen, Torben ; Hildebrand, Falk ; Kaas, Rolf Sommer ; Kennedy, Sean ; Kristiansen, Karsten ; Kultima, Jens Roat ; Léonard, Pierre ; Levenez, Florence ; Lund, Ole ; Moumen, Bouziane ; Denis, Le Paslier ; Pons, Nicolas ; Pedersen, Oluf ; Prifti, Edi ; Qin, Junjie ; Raes, Jeroen ; Sørensen, Søren ; Tap, Julien ; Tims, Sebastian ; Ussery, David ; Yamada, Takuji ; Renault, Pierre ; Sicheritz-Pontén, Thomas ; Bork, Peer ; Wang, Jun ; Brunak, Søren ; Ehrlich, S. Dusko
in journal: Nature Biotechnology (ISSN: 1087-0156) (DOI: http://dx.doi.org/10.1038/nbt.2939), vol: 32, issue: 8, pages: 822-828, 2014

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2014     |    DOI: http://dx.doi.org/10.1038/nbt.2939

 

An integrated catalog of reference genes in the human gut microbiome

Li, Junhua ; Jia, Huijue ; Cai, Xianghang ; Zhong, Huanzi ; Feng, Qiang ; Sunagawa, Shinichi ; Arumugam, Manimozhiyan ; Kultima, Jens Roat ; Prifti, Edi ; Nielsen, Trine ; Juncker, Agnieszka ; Nielsen, Henrik Bjørn ; Brunak, Søren
in journal: Nature Biotechnology (ISSN: 1087-0156) (DOI: http://dx.doi.org/10.1038/nbt.2942), vol: 32, issue: 8, pages: 834-841, 2014

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2014     |    DOI: http://dx.doi.org/10.1038/nbt.2942

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Metagenomic Systems Biology of the Human Microbiome

Bonde, Ida ; Nielsen, Henrik Bjørn (Supervisor) ; Sicheritz-Pontén, Thomas (Main supervisor)
Technical University of Denmark, pages: 153

Type: Ph.D. thesis

Status: Published     |    Year: 2014