Henrik Bjørn Nielsen

Henrik Bjørn Nielsen

Associate professor

DTU SYSTEMS BIOLOGY
Department of Systems Biology

Center for Biological Sequence Analysis
Microbiome Systems Biology

Technical University of Denmark

Kemitorvet

Building 208, room 017

2800 Kgs. Lyngby

Ph.
Ph.
Fax +45 45 93 15 85
E-mail hbjorn@cbs.dtu.dk
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2015
 

Predicting facial characteristics from complex polygenic variations

Fagertun, Jens ; Wolffhechel, Karin Marie Brandt ; Pers, Tune ; Nielsen, Henrik Bjørn ; Gudbjartsson, Daniel ; Stefansson, Hreinn ; Stefansson, Kari ; Paulsen, Rasmus Reinhold ; Jarmer, Hanne Østergaard
in journal: Forensic Science International: Genetics (ISSN: 1872-4973) (DOI: http://dx.doi.org/10.1016/j.fsigen.2015.08.004), vol: 19, pages: 263-268, 2015

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2015     |    DOI: http://dx.doi.org/10.1016/j.fsigen.2015.08.004

 

A retrospective metagenomics approach to studying Blastocystis

Andersen, Lee O'Brien ; Bonde, Ida ; Nielsen, Henrik Bjørn ; Stensvold, Christen Rune
in journal: F E M S Microbiology Reviews (ISSN: 0168-6445) (DOI: http://dx.doi.org/10.1093/femsec/fiv072), vol: 91, issue: 7, 2015

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2015     |    DOI: http://dx.doi.org/10.1093/femsec/fiv072

 

A catalog of the mouse gut metagenome

Xiao, Liang ; Feng, Qiang ; Liang, Suisha ; Sonne, Si Brask ; Xia, Zhongkui ; Qiu, Xinmin ; Li, Xiaoping ; Long, Hua ; Zhang, Jianfeng ; Zhang, Dongya ; Liu, Chuan ; Fang, Zhiwei ; Chou, Joyce ; Glanville, Jacob ; Hao, Qin ; Kotowska, Dorota ; Colding, Camilla ; Licht, Tine Rask ; Wu, Donghai ; Yu, Jun ; Sung, Joseph Jao Yiu ; Liang, Qiaoyi ; Li, Junhua ; Jia, Huijue ; Lan, Zhou ; Tremaroli, Valentina ; Dworzynski, Piotr ; Nielsen, Henrik Bjørn ; Bäckhed, Fredrik ; Doré, Joël ; Le Chatelier, Emmanuelle ; Ehrlich, S. Dusko ; Lin, John C. ; Arumugam, Manimozhiyan ; Wang, Jun ; Madsen, Lise ; Kristiansen, Karsten
in journal: Nature Biotechnology (ISSN: 1087-0156) (DOI: http://dx.doi.org/10.1038/nbt.3353), vol: 33, issue: 10, pages: 1103-1108, 2015

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2015     |    DOI: http://dx.doi.org/10.1038/nbt.3353

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Early Divergent Strains of Yersinia pestis in Eurasia 5,000 Years Ago

Rasmussen, Simon ; Allentoft, Morten Erik ; Nielsen, Kasper ; Orlando, Ludovic ; Sikora, Martin ; Sjögren, Karl-Göran ; Pedersen, Anders Gorm ; Schubert, Mikkel ; Van Dam, Alex ; Kapel, Christian Moliin Outzen ; Nielsen, Henrik Bjørn ; Brunak, Søren ; Avetisyan, Pavel ; Epimakhov, Andrey ; Khalyapin, Mikhail Viktorovich ; Gnuni, Artak ; Kriiska, Aivar ; Lasak, Irena ; Metspalu, Mait ; Moiseyev, Vyacheslav ; Gromov, Andrei ; Pokutta, Dalia ; Saag, Lehti ; Varul, Liivi ; Yepiskoposyan, Levon ; Sicheritz-Pontén, Thomas ; Foley, Robert A ; Lahr, Marta Mirazón ; Nielsen, Rasmus ; Kristiansen, Kristian ; Willerslev, Eske
in journal: Cell (ISSN: 0092-8674) (DOI: http://dx.doi.org/10.1016/j.cell.2015.10.009), vol: 163, issue: 3, pages: 571-582, 2015

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2015     |    DOI: http://dx.doi.org/10.1016/j.cell.2015.10.009

 

Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota

Forslund, Kristoffer ; Hildebrand, Falk  ; Nielsen, Trine N. ; Falony, Gwen ; Le Chatelier, Emmanuelle ; Sunagawa, Shinichi ; Prifti, Edi ; Vieira-Silva, Sara ; Gudmundsdottir, Valborg ; Pedersen, Helle Krogh ; Arumugam, Manimozhiyan ; Kristiansen, Karsten ; Yvonne Voig, Anita ; Vestergaard, Henrik ; Hercog, Rajna ; Costea, Paul Igor ; Kultima, Jens Roat ; Li, Junhua ; Jørgensen, Torben ; Levenez, Florence ; Dore, Joël ; Nielsen, Henrik Bjørn ; Brunak, Søren ; Raes, Jeroen ; Hansen, Torben ; Wang, Jun ; Ehrlich, S. Dusko ; Bork, Peer ; Pedersen, Oluf
in journal: Nature (ISSN: 0028-0836) (DOI: http://dx.doi.org/10.1038/nature15766), vol: 528, issue: 7581, pages: 262-266, 2015

Type: Letter (Peer reviewed)

Status: Published     |    Year: 2015     |    DOI: http://dx.doi.org/10.1038/nature15766

2014
 

Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes

Nielsen, Henrik Bjørn ; Almeida, Mathieu ; Juncker, Agnieszka ; Rasmussen, Simon ; Li, Junhua ; Sunagawa, Shinichi ; Plichta, Damian Rafal ; Gautier, Laurent ; Pedersen, Anders Gorm ; Emmanuelle, Le Chatelier ; Pelletier, Eric ; Bonde, Ida ; Nielsen, Trine ; Manichanh, Chaysavanh ; Arumugam, Manimozhiyan ; Batto, Jean-Michel ; dos Santos, Marcelo Bertalan Quintanilha ; Blom, Nikolaj ; Borruel, Natalia ; Burgdorf, Kristoffer S. ; Boumezbeur, Fouad ; Casellas, Francesc ; Doré, Joël ; Dworzynski, Piotr ; Guarner, Francisco ; Hansen, Torben ; Hildebrand, Falk ; Kaas, Rolf Sommer ; Kennedy, Sean ; Kristiansen, Karsten ; Kultima, Jens Roat ; Léonard, Pierre ; Levenez, Florence ; Lund, Ole ; Moumen, Bouziane ; Denis, Le Paslier ; Pons, Nicolas ; Pedersen, Oluf ; Prifti, Edi ; Qin, Junjie ; Raes, Jeroen ; Sørensen, Søren ; Tap, Julien ; Tims, Sebastian ; Ussery, David ; Yamada, Takuji ; Renault, Pierre ; Sicheritz-Pontén, Thomas ; Bork, Peer ; Wang, Jun ; Brunak, Søren ; Ehrlich, S. Dusko
in journal: Nature Biotechnology (ISSN: 1087-0156) (DOI: http://dx.doi.org/10.1038/nbt.2939), vol: 32, issue: 8, pages: 822-828, 2014

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2014     |    DOI: http://dx.doi.org/10.1038/nbt.2939

 

An integrated catalog of reference genes in the human gut microbiome

Li, Junhua ; Jia, Huijue ; Cai, Xianghang ; Zhong, Huanzi ; Feng, Qiang ; Sunagawa, Shinichi ; Arumugam, Manimozhiyan ; Kultima, Jens Roat ; Prifti, Edi ; Nielsen, Trine ; Juncker, Agnieszka ; Nielsen, Henrik Bjørn ; Brunak, Søren
in journal: Nature Biotechnology (ISSN: 1087-0156) (DOI: http://dx.doi.org/10.1038/nbt.2942), vol: 32, issue: 8, pages: 834-841, 2014

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2014     |    DOI: http://dx.doi.org/10.1038/nbt.2942

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Metagenomic Systems Biology of the Human Microbiome

Bonde, Ida ; Nielsen, Henrik Bjørn (Supervisor) ; Sicheritz-Pontén, Thomas (Main supervisor)
Technical University of Denmark, pages: 153

Type: Ph.D. thesis

Status: Published     |    Year: 2014

2013
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The chemical interactome space between the human host and the genetically defined gut metabotypes

Jacobsen, Ulrik Plesner ; Nielsen, Henrik Bjørn ; Hildebrand, Falk ; Raes, Jeroen ; Sicheritz-Pontén, Thomas ; Kouskoumvekaki, Irene ; Panagiotou, Gianni
in journal: I S M E Journal (ISSN: 1751-7362) (DOI: http://dx.doi.org/10.1038/ismej.2012.141), vol: 7, pages: 730-742, 2013

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2013     |    DOI: http://dx.doi.org/10.1038/ismej.2012.141

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Transcriptome Responses to Combinations of Stresses in Arabidopsis

Rasmussen, Simon ; Barah, Pankaj ; Suarez-Rodriguez, Maria Cristina ; Bressendorff, Simon ; Friis, Pia ; Costantino, Paolo ; Bones, Atle M. ; Nielsen, Henrik Bjørn ; Mundy, John
in journal: Plant Physiology (ISSN: 0032-0889) (DOI: http://dx.doi.org/10.1104/pp.112.210773), vol: 161, issue: 4, pages: 1783-1794, 2013

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2013     |    DOI: http://dx.doi.org/10.1104/pp.112.210773