Group publications

 

Publikationer rss feed

2017
 

Comparative proteomics of oxidative stress response of Lactobacillus acidophilus NCFM reveals effects on DNA repair and cysteine de novo synthesis

Calderini, Elia ; Celebioglu, Hasan Ufuk ; Villarroel, Julia ; Jacobsen, Susanne ; Svensson, Birte ; Pessione, Enrica
in journal: Proteomics (ISSN: 1615-9853) (DOI: http://dx.doi.org/10.1002/pmic.201600178), 2017

Type: Journal article (Peer reviewed)

Status: E-pub ahead of print     |    Year: 2017     |    DOI: http://dx.doi.org/10.1002/pmic.201600178

  PDF

Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods

Ahrenfeldt, Johanne ; Skaarup, Carina ; Hasman, Henrik ; Pedersen, Anders Gorm ; Aarestrup, Frank Møller ; Lund, Ole
in journal: BMC Genomics (ISSN: 1471-2164) (DOI: http://dx.doi.org/10.1186/s12864-016-3407-6), vol: 18, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1186/s12864-016-3407-6

 

Patterns of infections, aetiological agents, and antimicrobial resistance at a tertiary care hospital in northern Tanzania

Kumburu, Happiness Houka ; Sonda, Tolbert ; Mmbaga, Blandina Theophil ; Alifrangis, Michael ; Lund, Ole ; Kibiki, Gibson ; Aarestrup, Frank Møller
in journal: Tropical Medicine & International Health (ISSN: 1360-2276) (DOI: http://dx.doi.org/10.1111/tmi.12836), 2017

Type: Journal article (Peer reviewed)

Status: E-pub ahead of print     |    Year: 2017     |    DOI: http://dx.doi.org/10.1111/tmi.12836

 

Norwegian patients and retail chicken meat share cephalosporin-resistant Escherichia coli and IncK/blaCMY-2 resistance plasmids

Berg, E. S. ; Wester, A. L. ; Ahrenfeldt, Johanne ; Mo, S. S. ; Slettemeås, J. S. ; Steinbakk, M ; Samuelsen, Ø. ; Grude, N. ; Simonsen, G. S. ; Løhr, I. H. ; Jørgensen, S. B. ; Tofteland, S. ; Lund, Ole ; Dahle, U. R. ; Sunde, M.
in journal: Clinical Microbiology and Infection (ISSN: 1198-743X) (DOI: http://dx.doi.org/10.1016/j.cmi.2016.12.035), 2017

Type: Journal article (Peer reviewed)

Status: E-pub ahead of print     |    Year: 2017     |    DOI: http://dx.doi.org/10.1016/j.cmi.2016.12.035

  PDF

Perturbed CD8+ T cell TIGIT/CD226/PVR axis despite early initiation of antiretroviral treatment in HIV infected individuals

Tauriainen, Johanna ; Scharf, Lydia ; Frederiksen, Juliet Wairimu ; Naji, Ali ; Ljunggren, Hans-Gustaf ; Sönnerborg, Anders ; Lund, Ole ; Reyes-Terán, Gustavo ; Hecht, Frederick Mm ; Deeks, Steven G. ; Betts, Michael R. ; Buggert, Marcus ; Karlsson, Annika C.
in journal: Scientific Reports (ISSN: 2045-2322) (DOI: http://dx.doi.org/10.1038/srep40354), vol: 7, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1038/srep40354

  PDF

ArrayPitope: Automated Analysis of Amino Acid Substitutions for Peptide Microarray-Based Antibody Epitope Mapping

Hansen, Christian Skjødt ; Østerbye, Thomas ; Marcatili, Paolo ; Lund, Ole ; Buus, Søren ; Nielsen, Morten
in journal: P L o S One (ISSN: 1932-6203) (DOI: http://dx.doi.org/10.1371/journal.pone.0168453), vol: 12, issue: 1, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1371/journal.pone.0168453

 

Revealing the compact structure of lactic acid bacterial hetero-exopolysaccharides by SAXS and DLS

Khan, Sanaullah ; Birch, Johnny ; Harris, Pernille ; Van Calsteren, Marie-Rose ; Ipsen, Richard ; Peters, Günther H.J. ; Svensson, Birte ; Almdal, Kristoffer
in journal: Biomacromolecules (ISSN: 1525-7797) (DOI: http://dx.doi.org/10.1021/acs.biomac.6b01597), 2017

Type: Journal article (Peer reviewed)

Status: E-pub ahead of print     |    Year: 2017     |    DOI: http://dx.doi.org/10.1021/acs.biomac.6b01597

  PDF

Evaluating next-generation sequencing for direct clinical diagnostics in diarrhoeal disease

Joensen, Katrine Grimstrup ; Engsbro, A L Ø ; Lukjancenko, Oksana ; Kaas, Rolf Sommer ; Lund, Ole ; Westh, H. ; Aarestrup, Frank Møller
in journal: European Journal of Clinical Microbiology & Infectious Diseases (ISSN: 0934-9723) (DOI: http://dx.doi.org/10.1007/s10096-017-2947-2), pages: 1-14, 2017

Type: Journal article (Peer reviewed)

Status: E-pub ahead of print     |    Year: 2017     |    DOI: http://dx.doi.org/10.1007/s10096-017-2947-2

 

Investigation of the indigenous fungal community populating barley grains: Secretomes and xylanolytic potential

Sultan, Abida ; Frisvad, Jens Christian ; Andersen, Birgit ; Svensson, Birte ; Finnie, Christine
in journal: Journal of Proteomics (ISSN: 1874-3919) (DOI: http://dx.doi.org/10.1016/j.jprot.2017.03.009), 2017

Type: Journal article (Peer reviewed)

Status: E-pub ahead of print     |    Year: 2017     |    DOI: http://dx.doi.org/10.1016/j.jprot.2017.03.009

2016
 

β-Amyloid pathogenesis: Chemical properties versus cellular levels

Tiwari, Manish Kumar ; Kepp, Kasper Planeta
in journal: Alzheimer's & Dementia (ISSN: 1552-5260) (DOI: http://dx.doi.org/10.1016/j.jalz.2015.06.1895), vol: 12, issue: 2, pages: 184–194, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2016     |    DOI: http://dx.doi.org/10.1016/j.jalz.2015.06.1895

 

Bacterial polysaccharide levan as stabilizing, non-toxic and functional coating material for microelement-nanoparticles.

Bondarenko, O. M. ; Ivask, A. ; Kahru, A. ; Vija, H. ; Titma, T. ; Visnapuu, M. ; Joost, U. ; Pudova, K. ; Adamberg, S. ; Visnapuu, Triinu ; Alamae, T.
in journal: Carbohydrate Polymers (ISSN: 0144-8617) (DOI: http://dx.doi.org/10.1016/j.carbpol.2015.09.093), vol: 136, pages: 710-720, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2016     |    DOI: http://dx.doi.org/10.1016/j.carbpol.2015.09.093

 

Plant α-glucan phosphatases SEX4 and LSF2 display different affinity for amylopectin and amylose

Wilkens, Casper ; Auger, Kyle D. ; Anderson, Nolan T. ; Meekins, David A. ; Raththagala, Madushi ; Abou Hachem, Maher ; Payne, Christina M. ; Gentry, Matthew S. ; Svensson, Birte
in journal: Febs Letters (ISSN: 0014-5793) (DOI: http://dx.doi.org/10.1002/1873-3468.12027), vol: 590, issue: 1, pages: 118-128, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2016     |    DOI: http://dx.doi.org/10.1002/1873-3468.12027

  PDF

Propionibacterium acnes: disease-causing agent or common contaminant? Detection in diverse patient samples by next generation sequencing

Mollerup, Sarah ; Friis-Nielsen, Jens ; Vinner, Lasse ; Richter, Stine Raith ; Fridholm, Helena ; Herrera, Jose Romero ; Lund, Ole ; Brunak, Søren ; Gonzalez-Izarzugaza, Jose Maria ; Mourier, Tobias ; Nielsen, Lars Peter ; Hansen, Anders Johannes
in journal: Journal of Clinical Microbiology (ISSN: 0095-1137) (DOI: http://dx.doi.org/10.1128/jcm.02723-15), vol: 54, issue: 4, pages: 980-987, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2016     |    DOI: http://dx.doi.org/10.1128/jcm.02723-15

  PDF

Identification of Known and Novel Recurrent Viral Sequences in Data from Multiple Patients and Multiple Cancers

Friis-Nielsen, Jens ; Kjartansdóttir, Kristín Rós ; Mollerup, Sarah ; Asplund, Maria ; Mourier, Tobias ; Holm Jensen, Randi ; Arn Hansen, Thomas ; Rey-Iglesia, Alba ; Vinner, Lasse ; Fridholm, Helena ; Nielsen, Lars Peter ; Willerslev, Eske ; Sicheritz-Pontén, Thomas ; Lund, Ole ; Hansen, Anders Johannes ; Gonzalez-Izarzugaza, Jose Maria ; Brunak, Søren
in journal: Viruses (ISSN: 1999-4915) (DOI: http://dx.doi.org/10.3390/v8020053), vol: 8, issue: 53, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2016     |    DOI: http://dx.doi.org/10.3390/v8020053

  PDF

Iminosugar inhibitors of carbohydrate-active enzymes that underpin cereal grain germination and endosperm metabolism

Andriotis, Vasilios M. E. ; Rejzek, Martin ; Rugen, Michael D. ; Svensson, Birte ; Smith, Alison M. ; Field, Robert A.
in journal: Biochemical Society Transactions (ISSN: 0300-5127) (DOI: http://dx.doi.org/10.1042/BST20150222), vol: 44, issue: 1, pages: 159-165, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2016     |    DOI: http://dx.doi.org/10.1042/BST20150222

  PDF

ChemProt-3.0: a global chemical biology diseases mapping

Kringelum, Jens Vindahl ; Kjærulff, Sonny Kim ; Brunak, Søren ; Lund, Ole ; Oprea, Tudor ; Taboureau, Olivier
in journal: Database (ISSN: 1758-0463) (DOI: http://dx.doi.org/10.1093/database/bav123), vol: 2016, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2016     |    DOI: http://dx.doi.org/10.1093/database/bav123

 

An efficient arabinoxylan-debranching α-l-arabinofuranosidase of family GH62 from Aspergillus nidulans contains a secondary carbohydrate binding site

Wilkens, Casper ; Andersen, Susan ; Petersen, Bent O. ; Li, An ; Busse-Wicher, Marta ; Birch, Johnny ; Cockburn, Darrell ; Nakai, Hiroyuki ; Christensen, Hans Erik Mølager ; Kragelund, Birthe B. ; Dupree, Paul ; McCleary, Barry ; Hindsgaul, Ole ; Abou Hachem, Maher ; Svensson, Birte
in journal: Applied Microbiology and Biotechnology (ISSN: 0175-7598) (DOI: http://dx.doi.org/10.1007/s00253-016-7417-8), vol: 100, issue: 14, pages: 6265-6277, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2016     |    DOI: http://dx.doi.org/10.1007/s00253-016-7417-8

 

Exploring the Plant–Microbe Interface by Profiling the Surface-Associated Proteins of Barley Grains

Sultan, Abida ; Andersen, Birgit ; Svensson, Birte ; Finnie, Christine
in journal: Journal of Proteome Research (ISSN: 1535-3893) (DOI: http://dx.doi.org/10.1021/acs.jproteome.5b01042), vol: 15, issue: 4, pages: 1151-1167, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2016     |    DOI: http://dx.doi.org/10.1021/acs.jproteome.5b01042

 

Differential proteome and cellular adhesion analyses of the probiotic bacterium Lactobacillus acidophilus NCFM grown on raffinose - an emerging prebiotic

Celebioglu, Hasan Ufuk ; Hansen, Morten Ejby ; Majumder, Avishek ; Købler, Carsten ; Jun Goh, Yong ; Thorsen, Kristian ; Schmidt, Bjarne Gregers ; O'Flaherty, Sarah ; Abou Hachem, Maher ; Lahtinen, Sampo J. ; Jacobsen, Susanne ; Klaenhammer, Todd R. ; Pedersen, Susanne Brix ; Mølhave, Kristian ; Svensson, Birte
in journal: Proteomics (ISSN: 1615-9853) (DOI: http://dx.doi.org/10.1002/pmic.201500212), vol: 16, issue: 9, pages: 1361-1375, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2016     |    DOI: http://dx.doi.org/10.1002/pmic.201500212

  PDF

Global Genomic Epidemiology of Salmonella enterica Serovar Typhimurium DT104

Leekitcharoenphon, Pimlapas ; Hendriksen, Rene S. ; Le Hello, Simon ; Weill, François-Xavier ; Baggesen, Dorte Lau ; Jun, Se-Ran ; Ussery, David ; Lund, Ole ; Crook, Derrick W ; Wilson, Daniel J ; Aarestrup, Frank Møller
in journal: Applied and Environmental Microbiology (ISSN: 0099-2240) (DOI: http://dx.doi.org/10.1128/AEM.03821-15), vol: 82, issue: 8, pages: 2516-2526, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2016     |    DOI: http://dx.doi.org/10.1128/AEM.03821-15

 

Benchtop Whole-Genome Sequencing for Identification of Nosocomial Outbreaks in Tanzania

Sonda, Tolbert ; Kumburu, Happiness ; Zwetselaar, Marco van ; Ahrenfeldt, Johanne ; Alifrangis, Michael ; Lund, Ole ; Kibiki, Gibson ; Aarestrup, Frank Møller
in journal: Infection Control & Hospital Epidemiology (ISSN: 0899-823X) (DOI: http://dx.doi.org/10.1017/ice.2016.28), vol: 37, issue: 5, pages: 622-623, 2016

Type: Comment/debate (Peer reviewed)

Status: Published     |    Year: 2016     |    DOI: http://dx.doi.org/10.1017/ice.2016.28

  PDF

Free Amino Acids in Human Milk and Associations with Maternal Anthropometry and Infant Growth

Larnkjær, Anni ; Bruun, Signe ; Pedersen, Dorthe ; Zachariassen, Gitte ; Barkholt, Vibeke ; Agostoni, Carlo ; Mølgaard, Christian ; Husby, Steffen ; Michaelsen, Kim F.
in journal: Journal of Pediatric Gastroenterology and Nutrition (ISSN: 0277-2116) (DOI: http://dx.doi.org/10.1097/MPG.0000000000001195), vol: 63, issue: 3, pages: 374-378, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2016     |    DOI: http://dx.doi.org/10.1097/MPG.0000000000001195

  PDF

Structure and function of α-glucan debranching enzymes

Møller, Marie Sofie ; Henriksen, Anette ; Svensson, Birte
in journal: Cellular and Molecular Life Sciences (ISSN: 1420-682X) (DOI: http://dx.doi.org/10.1007/s00018-016-2241-y), vol: 73, issue: 14, pages: 2619-2641, 2016

Type: Review (Peer reviewed)

Status: Published     |    Year: 2016     |    DOI: http://dx.doi.org/10.1007/s00018-016-2241-y

 

Serum Tau Fragments Predict Return to Play in Concussed Professional Ice Hockey Players

Shahim, Pashtun ; Linemann, Thomas ; Inekci, Dilek ; Karsdal, Morten Asser ; Blennow, Kaj ; Tegner, Yelverton ; Zetterberg, Henrik ; Henriksen, Kim
in journal: Journal of Neurotrauma (ISSN: 0897-7151) (DOI: http://dx.doi.org/10.1089/neu.2014.3741), 2016

Type: Journal article (Peer reviewed)

Status: E-pub ahead of print     |    Year: 2016     |    DOI: http://dx.doi.org/10.1089/neu.2014.3741

  PDF

Maltase protein of Ogataea (Hansenula) polymorpha is a counterpart to resurrected ancestor protein ancMALS of yeast maltases and isomaltases

Viigand, Katrin ; Visnapuu, Triinu ; Mardo, Karin ; Aasamets, Anneli ; Alamäe, Tiina
in journal: Yeast (ISSN: 0749-503x) (DOI: http://dx.doi.org/10.1002/yea.3157), vol: 33, issue: 8, pages: 415-432, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2016     |    DOI: http://dx.doi.org/10.1002/yea.3157


http://www.bio.dtu.dk/english/Research/Research-groups/Enzyme-and-Protein-Chemistry/Gruppens-publikationer
29 MARCH 2017