TLR2 Controls Intestinal Carcinogen Detoxication by CYP1A1.

Nguyen Do, Khoa ; Fink, Lisbeth Nielsen ; Jensen, Thomas Elbenhardt ; Gautier, Laurent ; Parlesak, Alexandr

in journal: P L o S One (ISSN: 1932-6203) (DOI: http://dx.doi.org/10.1371/journal.pone.0032309), vol: 7, issue: 3, pages: e32309, 2012

Type: Journal article - Journal article

DOI: 10.1371/journal.pone.0032309

Toxicogenomics Investigation Under the eTOX Project

Taboureau, Olivier ; Hersey, Anne ; Audouze, Karine Marie Laure ; Gautier, Laurent ; Jacobsen, Ulrik Plesner ; Akhtar, Ruth ; Atkinson, Francis ; Overington, John P. ; Brunak, Søren

in journal: Journal of Pharmacogenomics & Pharmacoproteomics (ISSN: 2153-0645) (DOI: http://dx.doi.org/10.4172/2153-0645.S7-001), 2012

Type: Journal article - Journal article

DOI: 10.4172/2153-0645.S7-001

Sharing programming resources between Bio* projects through remote procedure call and native call stack strategies.

Prins, Pjotr ; Goto, Naohisa ; Yates, Andrew ; Gautier, Laurent ; Willis, Scooter ; Fields, Christopher ; Katayama, Toshiaki

in journal: Methods in Molecular Biology (ISSN: 1064-3745) (DOI: http://dx.doi.org/ 10.1007/978-1-61779-585-5_21), vol: 856, pages: 513-527, 2012

Type: Journal article - Journal article

DOI: 10.1007/978-1-61779-585-5_21

Cost-effective multiplexing before capture allows screening of 25 000 clinically relevant SNPs in childhood acute lymphoblastic leukemia

Wesolowska, Agata ; Dalgaard, M. D. ; Borst, L. ; Gautier, Laurent ; Bak, M. ; Weinhold, Nils ; Nielsen, B. F. ; Helt, L. R. ; Audouze, Karine Marie Laure ; Nersting, J ; Tommerup, N. ; Brunak, Søren ; Sicheritz-Pontén, Thomas ; Leffers, H. ; Schmiegelow, K. ; Gupta, Ramneek

in journal: Leukemia (ISSN: 0887-6924) (DOI: http://dx.doi.org/10.1038/leu.2011.32), vol: 25, pages: 1001-1006, 2011

Type: Journal article - Journal article

DOI: 10.1038/leu.2011.32

Enterotypes of the human gut microbiome

Arumugam, Manimozhiyan ; Raes, Jeroen ; Pelletier, Eric ; Le Paslier, Denis ; Yamada, Takuji ; Mende, Daniel R. ; Fernandes, Gabriel R. ; Tap, Julien ; Bruls, Thomas ; Batto, Jean-Michel ; dos Santos, Marcelo Bertalan Quintanilha ; Borruel, Natalia ; Casellas, Francesc ; Fernandez, Leyden ; Gautier, Laurent ; Hansen, Torben ; Hattori, Masahira ; Hayashi, Tetsuya ; Kleerebezem, Michiel ; Kurokawa, Ken ; Leclerc, Marion ; Levenez, Florence ; Manichanh, Chaysavanh ; Nielsen, Henrik Bjørn ; Nielsen, Trine ; Pons, Nicolas ; Poulain, Julie ; Qin, Junjie ; Sicheritz-Pontén, Thomas ; Tims, Sebastian ; Torrents, David ; Ugarte, Edgardo ; Zoetendal, Erwin G. ; Wang, Jun ; Guarner, Francisco ; Pedersen, Oluf ; de Vos, Willem M. ; Brunak, Søren ; Doré, Joel ; Antolín, María ; Artiguenave, François ; Blottiere, Hervé M. ; Almeida, Mathieu ; Brechot, Christian ; Cara, Carlos ; Chervaux, Christian ; Cultrone, Antonella ; Delorme, Christine ; Denariaz, Gérard ; Dervyn, Rozenn ; Foerstner, Konrad U. ; Friss, Carsten ; van de Guchte, Maarten ; Guedon, Eric ; Haimet, Florence ; Huber, Wolfgang ; van Hylckama-Vlieg, Johan ; Jamet, Alexandre ; Juste, Catherine ; Kaci, Ghalia ; Knol, Jan ; Lakhdari, Omar ; Layec, Severine ; Le Roux, Karine ; Maguin, Emmanuelle ; Mérieux, Alexandre ; Melo Minardi, Raquel ; M'rini, Christine ; Muller, Jean ; Oozeer, Raish ; Parkhill, Julian ; Renault, Pierre ; Rescigno, Maria ; Sanchez, Nicolas ; Sunagawa, Shinichi ; Torrejon, Antonio ; Turner, Keith ; Vandemeulebrouck, Gaetana ; Varela, Encarna ; Winogradsky, Yohanan ; Zeller, Georg ; Weissenbach, Jean ; Ehrlich, S. Dusko ; Bork, Peer

in journal: Nature (ISSN: 0028-0836) (DOI: http://dx.doi.org/10.1038/nature09944), vol: 473, issue: 7346, pages: 174-180, 2011

Type: Journal article - Journal article

DOI: 10.1038/nature09944

Cancer stem cell overexpression of nicotinamide N-methyltransferase enhances cellular radiation resistance

D’Andrea, Filippo P. ; Safwat, Akmal ; Kassem, Moustapha ; Gautier, Laurent ; Overgaard, Jens ; Horsman, Michael R.

in journal: Radiotherapy & Oncology (ISSN: 0167-8140) (DOI: http://dx.doi.org/10.1016/j.radonc.2011.05.086), vol: 99, issue: 3, pages: 373-378, 2011

Type: Journal article - Journal article

DOI: 10.1016/j.radonc.2011.05.086

Parallel selection of chemotherapy-resistant cell lines to illuminate mechanisms of drug resistance in human tumors

Krzystanek, Marcin ; Eklund, Aron Charles ; Birkbak, Nicolai Juul ; Tegze, B. ; Gautier, Laurent ; Holberg Blicher, Lene ; Swanton, C. ; Richardson, A. L. ; Gyorffy, B. ; Szallasi, Zoltan Imre

in journal: ANNALS OF ONCOLOGY (ISSN: 0923-7534) (DOI: http://dx.doi.org/10.1093/annonc/mdr086), vol: 22, issue: 2, pages: ii44-ii47, 2011

Type: Conference article - Conference article

Presented at: Conference on Improving Care and Knowledge through Translational Research : Breast Cancer Conference, Brussels, Belgium

DOI: 10.1093/annonc/mdr086

Temperature influences the expression profiling of immune response genes in rainbow trout following DNA vaccination and VHS virus infection

Einer-Jensen, Katja ; Gautier, Laurent ; Rasmussen, Jesper Skou ; Lorenzen, Ellen ; Christensen, Mikkel Black ; Villanueva, Sara A. ; Martin, Samuel ; Evensen, Øystein ; Schyth, Brian Dall ; Lorenzen, Niels

Type: Conference abstract for conference - Conference abstract for conference

Presented at: Joint Western Fish Disease Workshop & AFS fish Health Section meeting, Nanaimo, British Columbia, Canada

An intuitive Python interface for Bioconductor libraries demonstrates the utility of language translators

Gautier, Laurent

in journal: B M C Bioinformatics (ISSN: 1471-2105) (DOI: http://dx.doi.org/10.1186/1471-2105-11-S12-S11), vol: 11, issue: Suppl. 12, pages: 11, 2010

Type: Journal article - Journal article

DOI: 10.1186/1471-2105-11-S12-S11

Relating genomic variation to drug response in childhood acute lymphoblastic leukemia by multiplexed targeted sequencing

Wesolowska, Agata ; Dalgaard, M.D. ; Borst, L. ; Gautier, Laurent ; Bak, M. ; Weinhold, Nils ; Nielsen, B.F. ; Nersting, J. ; Tommerup, N. ; Brunak, Søren ; Sicheritz-Pontén, Thomas ; Leffers, H. ; Schmiegelow, K. ; Gupta, Ramneek

in journal: Genome Biology (Online Edition) (ISSN: 1474-760X) (DOI: http://dx.doi.org/10.1186/gb-2010-11-S1-P41), vol: 11, 2010

Type: Conference abstract in journal - Conference abstract in journal

DOI: 10.1186/gb-2010-11-S1-P41

Implementation of a gene expression index calculation method based on the PDNN model

Nielsen, Henrik Bjørn ; Gautier, Laurent ; Knudsen, Steen

in journal: BIOINFORMATICS (ISSN: 1367-4803), vol: 21, issue: 5, pages: 687-688, 2005

Type: Journal article - Journal article

affy - analysis of Affymetrix GeneChip data at the probe level

Gautier, Laurent ; Cope, L. ; Bolstad, B.N. ; Irrizarry, R.A.

in journal: Bioinformatics (ISSN: 1367-4803) (DOI: http://dx.doi.org/ 10.1093/bioinformatics/btg405), vol: 20, issue: 3, pages: 307-315, 2004

Type: Journal article - Journal article

DOI: 10.1093/bioinformatics/btg405

Integrative Approaches to the Analysis of Microarray Expression Data:

Gautier, Laurent

Type: Ph.d. thesis - Ph.d. thesis

Bioconductor: open software development for computational biology and bioinformatics

Gentleman, R.C. ; Carey, V.J. ; Bates, D.M. ; Bolstad, B. ; Dettling, M. ; Dudoit, S. ; Ellis, B. ; Gautier, Laurent ; Ge, Y.C. ; Gentry, J. ; Hornik, K. ; Hothorn, T. ; Huber, W. ; Iacus, S. ; Irrizary, R. ; Leisch, F. ; Li, C. ; Maechler, M. ; Rossini, A.J. ; Sawitzki, G. ; Smith, C. ; Smyth, G. ; Tierney, L. ; Yang, J.Y.H. ; Zhang, J.H.

in journal: Genome Biology (ISSN: 1465-6906) (DOI: http://dx.doi.org/10.1186/gb-2004-5-10-r80), vol: 5, pages: R80, 2004

Type: Journal article - Journal article

DOI: 10.1186/gb-2004-5-10-r80

Alternative mapping of probes to genes for Affymetrix chips

Gautier, Laurent ; Møller, M. ; Friis-Hansen, L. ; Knudsen, Steen

in journal: BMC Bioinformatics (ISSN: 1471-2105) (DOI: http://dx.doi.org/10.1186/1471-2105-5-111), vol: 5, pages: 111, 2004

Type: Journal article - Journal article

DOI: 10.1186/1471-2105-5-111

A new non-linear normalization method for reducing variability in DNA microarray experiments

Workman, Christopher ; Jensen, Lars Juhl ; Jarmer, Hanne Østergaard ; Berka, Randy ; Gautier, Laurent ; Nielsen, Henrik Bjørn ; Saxild, Hans Henrik ; Nielsen, Claus ; Brunak, Søren ; Knudsen, Steen

in journal: Genome Biology (ISSN: 1465-6906) (DOI: http://dx.doi.org/10.1186/gb-2002-3-9-research0048), vol: 3, issue: 9, 2002

Type: Journal article - Journal article

DOI: 10.1186/gb-2002-3-9-research0048