Wide Distribution of Closely Related, Antibiotic-Producing Arthrobacter Strains throughout the Arctic Ocean

Wietz, Matthias ; Månsson, Maria ; Bowman, Jeff S. ; Blom, Nikolaj ; Ng, Yin ; Gram, Lone

in journal: Applied and Environmental Microbiology (ISSN: 0099-2240) (DOI: http://dx.doi.org/10.1128/​AEM.07096-11), vol: 78, issue: 6, pages: 2039-2042, 2012

Type: Journal article - Journal article

DOI: 10.1128/​AEM.07096-11

Microbial community structure of Arctic multiyear sea ice and surface seawater by 454 sequencing of the 16S RNA gene.

Bowman, Jeff S. ; Rasmussen, Simon ; Blom, Nikolaj ; Deming, Jody W ; Rysgaard, Søren ; Sicheritz-Pontén, Thomas

in journal: I S M E Journal (ISSN: 1751-7362) (DOI: http://dx.doi.org/10.1038/ismej.2011.76), pages: 1-10, 2011

Type: Journal article - Journal article

DOI: 10.1038/ismej.2011.76

NetPhosBac - A predictor for Ser/Thr phosphorylation sites in bacterial proteins

Miller, Martin Lee ; Soufi, Boumediene ; Jers, Carsten ; Blom, Nikolaj ; Macek, Boris ; Mijakovic, Ivan

in journal: Proteomics (ISSN: 1615-9853) (DOI: http://dx.doi.org/10.1002/pmic.200800285), vol: 9, issue: 1, pages: 116-125, 2009

Type: Journal article - Journal article

DOI: 10.1002/pmic.200800285

Kinase-specific prediction of protein phosphorylation sites

Miller, Martin Lee ; Blom, Nikolaj

in journal: Methods in Molecular Biology (ISSN: 1064-3745), pages: 299-310, 2009

Type: Journal article - Journal article

Linear motif atlas for phosphorylation-dependent signaling.

Miller, Martin Lee ; Jensen, LJ ; Diella, F ; Jørgensen, C ; Tinti, M ; Li, L ; Hsiung, M ; Parker, SA ; Bordeaux, J ; Sicheritz-Pontén, Thomas ; Olhovsky, M ; Pasculescu, A ; Alexander, J ; Knapp, S ; Blom, Nikolaj ; Bork, P ; Li, S ; Cesareni, G ; Pawson, T ; Turk, BE ; Yaffe, MB ; Brunak, Søren ; Linding, R

in journal: Science Signaling (ISSN: 1945-0877) (DOI: http://dx.doi.org/10.1126/scisignal.1159433), vol: 1, issue: 35, pages: 2, 2008

Type: Journal article - Journal article

DOI: 10.1126/scisignal.1159433

Linear motifs in phosphorylation-dependent signalling

Miller, Martin Lee ; Brunak, Søren ; Blom, Nikolaj

Type: Ph.d. thesis - Ph.d. thesis

Motif decomposition of the phosphotyrosine proteome reveals a new N-terminal binding motif for SHIP2

Miller, Martin Lee ; Hanke, S. ; Hinsby, A. M. ; Rundsten, Carsten Friis ; Brunak, Søren ; Mann, M. ; Blom, Nikolaj

in journal: Molecular and Cellular Proteomics (ISSN: 1535-9476), issue: 1, pages: 181-92, 2008

Type: Journal article - Journal article

Midbrain expression of Delta-like 1 homologue is regulated by GDNF and is associated with dopaminergic differentiation

Christophersen, Nicolai S. ; Gronborg, Mette ; Petersen, Thomas Nordahl ; Fjord-Larsen, Lone ; Jorgensen, Jesper R. ; Juliusson, Bengt ; Blom, Nikolaj ; Rosenblad, Carl ; Brundin, Patrik

in journal: Experimental neurology (ISSN: 0014-4886) (DOI: http://dx.doi.org/10.1016/j.expneurol.2007.01.014), issue: 2, pages: 791-801, 2007

Type: Journal article - Journal article

DOI: 10.1016/j.expneurol.2007.01.014

NetPhosYeast: prediction of protein phosphorylation sites in yeast

Ingrell, C.R. ; Miller, Martin Lee ; Jensen, O.N. ; Blom, Nikolaj

in journal: Bioinformatics (ISSN: 1367-4803) (DOI: http://dx.doi.org/10.1093/bioinformatics/btm020), vol: 23, issue: 7, pages: 895-897, 2007

Type: Journal article - Journal article

DOI: 10.1093/bioinformatics/btm020

Identification of novel genes regulated in the developing human ventral mesencephalon

Jørgensen, JR ; Juliusson, B ; Henriksen, KF ; Hansen, C ; Knudsen, Steen ; Petersen, Thomas Nordahl ; Blom, Nikolaj ; Seiger, A ; Wahlberg, LU

in journal: EXPERIMENTAL NEUROLOGY (ISSN: 0014-4886), vol: 198, issue: 2, pages: 427-437, 2006

Type: Journal article - Journal article

NetAcet: prediction of N-terminal acetylation sites

Kiemer, Lars ; Bendtsen, Jannick Dyrløv ; Blom, Nikolaj

in journal: Bioinformatics (ISSN: 1367-4803), vol: 21, issue: 7, pages: 1269-1270, 2005

Type: Journal article - Journal article

NetPhosK - Prediction of kinase-specific phosphorylation from sequence and sequence-derived features

Miller, Martin Lee ; Ponten, T.S. ; Petersen, T.N. ; Blom, Nikolaj

in journal: Febs Journal (ISSN: 1742-464X), vol: 272, pages: 111-111, 2005

Type: Conference abstract in journal - Conference abstract in journal

Prediction of caspase cleavage sites

Kristiansen, Karen ; Blom, Nikolaj

in journal: Febs Journal (ISSN: 1742-464X), vol: 272, pages: 156-157, 2005

Type: Conference abstract in journal - Conference abstract in journal

Prediction of post-translational glycosylation and phosphorylation of proteins from the amino acid sequence

Blom, Nikolaj ; Sicheritz-Pontén, Thomas ; Gupta, Ramneek ; Gammeltoft, S. ; Brunak, Søren

in journal: Proteomics (ISSN: 1615-9853) (DOI: http://dx.doi.org/10.1002/pmic.200300771), vol: 4, issue: 6, pages: 1633-1649, 2004

Type: Journal article - Journal article

DOI: 10.1002/pmic.200300771

Identification of phosphorylation sites in protein kinase A substrates using artificial neural networks and mass spectrometry

Hjerrild, M. ; Stensballe, A. ; Rasmussen, T.E. ; Kofoed, C.B. ; Blom, Nikolaj ; Sicheritz-Pontén, Thomas ; Larsen, M.R. ; Brunak, Søren ; Jensen, O.N. ; Gammeltoft, S.

in journal: Journal of Proteome Research, vol: 3, pages: 426-433, 2004

Type: Journal article - Journal article

Coronavirus 3CL(pro) proteinase cleavage sites: Possible relevance to SARS virus pathology

Kiemer, Lars ; Lund, Ole ; Brunak, Søren ; Blom, Nikolaj

in journal: BMC Bioinformatics (ISSN: 1471-2105) (DOI: http://dx.doi.org/10.1186/1471-2105-5-72), vol: 5, pages: 72, 2004

Type: Journal article - Journal article

DOI: 10.1186/1471-2105-5-72

Prediction of proprotein convertase cleavage sites

Duckert, Peter ; Brunak, Søren ; Blom, Nikolaj

in journal: Protein Engineering Design & Selection, vol: 17, pages: 107-112, 2004

Type: Journal article - Journal article

Phospho.ELM: A database of experimentally verified phosphorylation sites in eukaryotic proteins

Diella, F. ; Cameron, S. ; Gemund, C. ; Lindning, R. ; Via, A. ; Kuster, B. ; Sicheritz-Pontén, Thomas ; Blom, Nikolaj ; Gibson, T.J.

in journal: BMC Bioinformatics (ISSN: 1471-2105) (DOI: http://dx.doi.org/10.1186/1471-2105-5-79), vol: 5, pages: 79, 2004

Type: Journal article - Journal article

DOI: 10.1186/1471-2105-5-79

Feature-based prediction of non-classical and leaderless protein secretion

Bendtsen, Jannick Dyrløv ; Jensen, Lars Juhl ; Blom, Nikolaj ; von Heijne, G. ; Brunak, Søren

in journal: Protein Engineering Design & Selection, vol: 17, issue: 4, pages: 349-356, 2004

Type: Journal article - Journal article

Prediction of human protein function from post-translational modifications and localization features

Jensen, Lars Juhl ; Gupta, Ramneek ; Blom, Nikolaj ; Devos, D. ; Tamames, J. ; Kesmir, Can ; Nielsen, Henrik ; Stærfeldt, Hans Henrik ; Rapacki, Kristoffer ; Workman, Christopher ; Andersen, C.A.F. ; Knudsen, Steen ; Krogh, A. ; Valencia, A. ; Brunak, Søren

in journal: Journal of molecular biology (ISSN: 0022-2836), vol: 319, issue: 5, pages: 1257-1265, 2002

Type: Journal article - Journal article