PHUSER (Primer Help for USER): a novel tool for USER fusion primer design

Olsen, Lars Rønn ; Hansen, Niels Bjørn ; Bonde, Mads ; Genee, Hans Jasper ; Holm, Dorte Koefoed ; Carlsen, Simon ; Hansen, Bjarne Gram ; Patil, Kiran Raosaheb ; Mortensen, Uffe Hasbro ; Wernersson, Rasmus

in journal: Nucleic Acids Research (ISSN: 0305-1048) (DOI: http://dx.doi.org/10.1093/nar/gkr394), vol: 39, issue: Web Server issue, pages: W61-W67, 2011

Type: Journal article - Journal article

DOI: 10.1093/nar/gkr394

Experience with the use of online lectures, video Modules, and wiki-websites in engineering education

Pedersen, Anders Gorm ; Wernersson, Rasmus

part of: 7th International CDIO Conference 2011, 2011, Technical University of Denmark,

Type: Conference abstract in proceedings - Conference abstract in proceedings

Presented at: 7th International CDIO Conference, Copenhagen

The strength of intron donor splice sites in human genes displays a bell-shaped pattern

Wang, Kai ; Wernersson, Rasmus ; Brunak, Søren

in journal: Bioinformatics (ISSN: 1367-4803) (DOI: http://dx.doi.org/10.1093/bioinformatics/btr532), vol: 27, issue: 22, pages: 3079-3084, 2011

Type: Journal article - Journal article

DOI: 10.1093/bioinformatics/btr532

Cyclebase.org: version 2.0, an updated comprehensive, multi-species repository of cell cycle experiments and derived analysis results

Jensen, Lars Juhl ; Wernersson, Rasmus ; Brunak, Søren ; Jensen, Thomas Skøt ; Gauthier, NP

in journal: Nucleic Acids Research (ISSN: 0305-1048) (DOI: http://dx.doi.org/10.1093/nar/gkp1044), vol: 38, pages: 699-702, 2010

Type: Journal article - Journal article

DOI: 10.1093/nar/gkp1044

Optimization of the BLASTN substitution matrix for prediction of non-specific DNA microarray hybridization

Eklund, Aron Charles ; Friis, Pia ; Wernersson, Rasmus ; Szallasi, Zoltan Imre

in journal: Nucleic Acids Research (ISSN: 0305-1048) (DOI: http://dx.doi.org/10.1093/nar/gkp1116), vol: 38, issue: 4, pages: e27, 2010

Type: Journal article - Journal article

DOI: 10.1093/nar/gkp1116

InterMap3D: predicting and visualizing co-evolving protein residues

Gouveia-Oliveira, R. ; Roque, F.S. ; Wernersson, Rasmus ; Sicheritz-Ponten, T. ; Sackett, Peter Wad ; Molgaard, A. ; Pedersen, A.G.

in journal: Bioinformatics (ISSN: 1367-4803) (DOI: http://dx.doi.org/10.1093/bioinformatics/btp335), vol: 25, issue: 15, pages: 1963-1965, 2009

Type: Journal article - Journal article

DOI: 10.1093/bioinformatics/btp335

Systems biology analysis of pre-mRNA splicing and alternative splicing, and its role in cancers

Wang, Kai ; Brunak, Søren ; Wernersson, Rasmus

Type: Ph.d. thesis - Ph.d. thesis

Dice & DNA

Wernersson, Rasmus

in journal: BioScience Education e-journal, 2007

Type: Journal article - Journal article

Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags

Gorodkin, Jan ; Cirera, Susanna ; Hedegaard, Jacob ; Gilchrist, Michael J. ; Panitz, Frank ; Jørgensen, Claus ; Scheibye-Knudsen, Karsten ; Arvin, Troels ; Lumholdt, Steen ; Sawera, Milena ; Green, Trine ; Nielsen, Bente J. ; Havgaard, Jacob H. ; Rosenkilde, Carina ; Wang, Jun ; Li, Heng ; Li, Ruiqiang ; Liu, Bin ; Hu, Songnian ; Dong, Wei ; Li, Wei ; Yu, Jun ; Wang, Jian ; Stærfeldt, Hans Henrik ; Wernersson, Rasmus ; Madsen, Lone B. ; Thomsen, Bo ; Hornhoj, Henrik ; Zhan, Bujie ; Wang, Xuegang ; Wang, Xuefei ; Bolund, Lars ; Brunak, Søren ; Yang, Huanming ; Bendixen, Christian ; Fredholm, Merete

in journal: Genome biology (ISSN: 1465-6906), issue: 4, 2007

Type: Journal article - Journal article

Probe Selection for DNA Microarrays using OligoWiz

Wernersson, Rasmus ; Juncker, Agnieszka ; Nielsen, Henrik Bjørn

in journal: Nature protocols (ISSN: 1754-2189) (DOI: http://dx.doi.org/10.1038/nprot.2007.370), issue: 11, pages: 2677-91, 2007

Type: Journal article - Journal article

DOI: 10.1038/nprot.2007.370

CycleBase.org - a comprehensive multi-organism online database of cell-cycle experiments

Gauthier, Nicholas Paul ; Larsen, Malene Erup ; Wernersson, Rasmus ; de Lichtenberg, Ulrik ; Jensen, Lars Juhl ; Brunak, Søren ; Jensen, Thomas Skøt

in journal: Nucleic Acids Res (ISSN: 0305-1048) (DOI: http://dx.doi.org/10.1093/nar/gkm729), vol: 36, pages: D854-D859, 2007

Type: Journal article - Journal article

DOI: 10.1093/nar/gkm729

Improving comparability between microarray probe signals by thermodynamic intensity correction

Bruun, G. M. ; Wernersson, Rasmus ; Juncker, Agnieszka ; Willenbrock, Hanni ; Nielsen, Henrik Bjørn

in journal: Nucleic acids research (ISSN: 0305-1048) (DOI: http://dx.doi.org/10.1093/nar/gkl1098), issue: 7, 2007

Type: Journal article - Journal article

DOI: 10.1093/nar/gkl1098

SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation

Panitz, Frank ; Stengaard, Henrik ; Hornshoj, Henrik ; Gorodkin, Jan ; Hedegaard, Jakob ; Cirera, Susanne ; Thomsen, Bo ; Madsen, Lone B. ; Hoj, Anette ; Vingborg, Rikke K. ; Zahn, Bujie ; Wang, Xuegang ; Wang, Xuefei ; Wernersson, Rasmus ; Jørgensen, Claus B. ; Scheibye-Knudsen, Karsten ; Arvin, Troels ; Lumholdt, Steen ; Sawera, Milena ; Green, Trine ; Nielsen, Bente J. ; Havgaard, Jakob H. ; Brunak, Søren ; Fredholm, Merete ; Bendixen, Christian

in journal: Bioinformatics (ISSN: 1367-4803) (DOI: http://dx.doi.org/10.1093/bioinformatics/btm192), issue: 13, pages: 387-91, 2007

Type: Journal article - Journal article

DOI: 10.1093/bioinformatics/btm192

FeatureMap3D - a tool to map protein features and sequence conservation onto homologous structures in the PDB

Wernersson, Rasmus ; Rapacki, Kristoffer ; Stærfeldt, Hans Henrik ; Sackett, Peter Wad ; Mølgaard, Anne

in journal: Nucleic Acids Research, pages: 84-88, 2006

Type: Journal article - Journal article

Virtual Ribosome - a comprehensive DNA translation tool with support for integration of sequence feature annotation

Wernersson, Rasmus

in journal: Nucleic Acids Research, pages: 385-388, 2006

Type: Journal article - Journal article

An overabundance of phase 0 introns immediately after the start codon in eukaryotic genes

Wernersson, Rasmus ; Nielsen, Henrik

in journal: BMC Genomics (ISSN: 1471-2164) (DOI: http://dx.doi.org/10.1186/1471-2164-7-256), vol: 7, pages: 256, 2006

Type: Journal article - Journal article

DOI: 10.1186/1471-2164-7-256

New weakly expressed cell cycle-regulated genes in yeast

de Lichtenberg, Ulrik ; Wernersson, Rasmus ; Jensen, Thomas Skøt ; Nielsen, Henrik Bjørn ; Fausbøll, Anders ; Schmidt, P ; Hansen, Flemming Bryde ; Knudsen, Steen ; Brunak, Søren

in journal: YEAST (ISSN: 0749-503X), vol: 22, issue: 15, pages: 1191-1201, 2005

Type: Journal article - Journal article

FeatureExtract - extraction of sequence annotation made easy

Wernersson, Rasmus

in journal: NUCLEIC ACIDS RESEARCH (ISSN: 0305-1048), vol: 33, pages: w567-w569, 2005

Type: Journal article - Journal article

OligoWiz 2.0 - integrating sequence feature annotation into the design of microarray probes

Wernersson, Rasmus ; Nielsen, Henrik Bjørn

in journal: NUCLEIC ACIDS RESEARCH (ISSN: 0305-1048), vol: 33, pages: W611-W615, 2005

Type: Journal article - Journal article

Pigs in sequence space: A 0.66X coverage pig genome survey based on shotgun sequencing

Wernersson, Rasmus ; Schierup, M.H. ; Jorgensen, F.G. ; Gorodkin, J. ; Panitz, F. ; Stærfeldt, Hans Henrik ; Christensen, O.F. ; Mailund, T. ; Hornshoj, H. ; Klein, A. ; Wang, J. ; Liu, B. ; Hu, S.N. ; Dong, W. ; Li, W. ; Wong, G.K.S. ; Yu, J. ; Wang, J. ; Bendixen, C. ; Fredholm, M. ; Brunak, Søren ; Yang, H.M. ; Bolund, L.

in journal: BMC Genomics (ISSN: 1471-2164) (DOI: http://dx.doi.org/10.1186/1471-2164-6-70), vol: 6, pages: 70, 2005

Type: Journal article - Journal article

DOI: 10.1186/1471-2164-6-70