Genotyping using whole-genome sequencing is a realistic alternative to surveillance based on phenotypic antimicrobial susceptibility testing

Zankari, Ea ; Hasman, Henrik ; Kaas, Rolf Sommer ; Seyfarth, Anne Mette ; Agersø, Yvonne ; Lund, Ole ; Larsen, Mette Voldby ; Aarestrup, Frank Møller

in journal: Journal of Antimicrobial Chemotherapy (ISSN: 0305-7453) (DOI: http://dx.doi.org/10.1093/jac/dks496), vol: 68, issue: 4, pages: 771-777, 2013

Type: Journal article - Journal article

DOI: 10.1093/jac/dks496

Identification of Y-Chromosomally Encoded Minor Histocompatibility Antigens Using a Reverse Immunology Approach

Mortensen, Bo Kok ; Brændstrup, Peter ; Larsen, Malene Erup ; Larsen, Mette Voldby ; Lund, Ole ; Rasmussen, Michael ; Buus, Søren ; Stryhn, Anette ; Vindeløv, Lars

in journal: Biology of Blood and Marrow Transplantation (ISSN: 1083-8791) (DOI: http://dx.doi.org/10.1016/j.bbmt.2012.11.511), vol: 19, issue: 2, pages: S335, 2013

Type: Conference abstract in journal - Conference abstract in journal

Presented at: 2013 BMT Tandem Meetings, Salt Lake City, Utah

DOI: 10.1016/j.bbmt.2012.11.511

Bioinformatics Identification of Antigenic Peptide: Predicting the Specificity of Major MHC Class I and II Pathway Players.

Lund, Ole ; Karosiene, Edita ; Lundegaard, Claus ; Larsen, Mette Voldby ; Nielsen, Morten

part of: Antigen Processing (ISBN: 978-1-62703-217-9), pages: 247-260, 2013,

Type: Book chapter - Book chapter

Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria

Larsen, Mette Voldby ; Cosentino, Salvatore ; Rasmussen, Simon ; Rundsten, Carsten Friis ; Hasman, Henrik ; Marvig, Rasmus Lykke ; Jelsbak, Lars ; Sicheritz-Pontén, Thomas ; Ussery, David ; Aarestrup, Frank Møller ; Lund, Ole

in journal: Journal of Clinical Microbiology (ISSN: 0095-1137) (DOI: http://dx.doi.org/10.1128/JCM.06094-11), vol: 50, issue: 4, pages: 1355-1361, 2012

Type: Journal article - Journal article

DOI: 10.1128/JCM.06094-11

Identification of a Novel UTY‐Encoded Minor Histocompatibility Antigen

Mortensen, B. K. ; Rasmussen, A. H. ; Larsen, Malene Erup ; Larsen, Mette Voldby ; Lund, Ole ; Braendstrup, P. ; Harndahl, Mikkel Nors ; Rasmussen, M. ; Buus, S. ; Stryhn, A. ; Vindeløv, Lars

in journal: Scandinavian Journal of Immunology (ISSN: 0300-9475) (DOI: http://dx.doi.org/10.1111/j.1365-3083.2012.02708.x), vol: 76, issue: 2, pages: 141-150, 2012

Type: Journal article - Journal article

DOI: 10.1111/j.1365-3083.2012.02708.x

Identification of acquired antimicrobial resistance genes

Zankari, Ea ; Hasman, Henrik ; Cosentino, Salvatore ; Vestergaard, Martin ; Rasmussen, Simon ; Lund, Ole ; Aarestrup, Frank Møller ; Larsen, Mette Voldby

in journal: Journal of Antimicrobial Chemotherapy (ISSN: 0305-7453) (DOI: http://dx.doi.org/10.1093/jac/dks261), vol: 67, issue: 11, pages: 2640-2644, 2012

Type: Journal article - Journal article

DOI: 10.1093/jac/dks261

The Cancer Exome Generated by Alternative mRNA Splicing Dilutes Predicted HLA Class I Epitope Density

Stranzl, Thomas ; Larsen, Mette Voldby ; Lund, Ole ; Nielsen, Morten ; Brunak, Søren

in journal: P L o S One (ISSN: 1932-6203), vol: 7, issue: 9, pages: e38670, 2012

Type: Journal article - Journal article

Targeting of conserved Gag-epitopes in early HIV infection is associated with lower plasma viral load and slower CD4+ T cell depletion

Pérez, Carina L, Dr. ; Milush, Jeffrey M, Dr. ; Buggert, Marcus, Dr. ; Eriksson, Emily, Dr. ; Larsen, Mette Voldby ; Liegler, Teri ; Hartogensis, Wendy, Dr. ; Bacchetti, Peter, Dr. ; Lund, Ole ; Hecht, Frederick, Dr. ; Nixon, Douglas, Dr. ; Karlsson, Annika C, Dr.

in journal: AIDS Research and Human Retroviruses (ISSN: 0889-2229) (DOI: http://dx.doi.org/10.1089/AID.2012.0171), issue: ja, pages: 1-38, 2012

Type: Journal article - Journal article

DOI: 10.1089/AID.2012.0171

Identification of MHC class II restricted T‐cell‐mediated reactivity against MHC class I binding Mycobacterium tuberculosis peptides

Wang, Mingjun ; Tang, Sheila Tuyet ; Stryhn, Anette ; Justesen, Sune ; Larsen, Mette Voldby ; Dziegiel, Morten H. ; Lewinsohn, David M. ; Buus, Søren ; Lund, Ole ; Claesson, Mogens H.

in journal: Immunology (ISSN: 0019-2805) (DOI: http://dx.doi.org/10.1111/j.1365-2567.2010.03383.x), vol: 132, issue: 4, pages: 482-491, 2011

Type: Journal article - Journal article

DOI: 10.1111/j.1365-2567.2010.03383.x

Human Leukocyte Antigen (HLA) Class I Restricted Epitope Discovery in Yellow Fewer and Dengue Viruses: Importance of HLA Binding Strength.

Lund, Ole ; Nascimento, Eduardo J. M. ; Maciel, Milton, Jr ; Nielsen, Morten ; Larsen, Mette Voldby ; Lundegaard, Claus ; Harndahl, Mikkel ; Lamberth, Kasper ; Buus, Søren ; Salmon, Jérôme ; August, Thomas J. ; Marques, Ernesto T A, Jr

in journal: P L o S One (ISSN: 1932-6203) (DOI: http://dx.doi.org/10.1371/journal.pone.0026494), vol: 6, issue: 10, pages: e26494, 2011

Type: Journal article - Journal article

DOI: 10.1371/journal.pone.0026494

HLA Class I Binding 9mer Peptides from Influenza A Virus Induce CD4(+) T Cell Responses

Wang, M. J. ; Larsen, Mette Voldby ; Nielsen, Morten ; Harndahl, M. ; Justesen, S. ; Dziegiel, M.H. ; Buus, S. ; Tang, Sheila Tuyet ; Lund, Ole ; Claesson, M.H.

in journal: P L o S One (ISSN: 1932-6203) (DOI: http://dx.doi.org/10.1371/journal.pone.0010533), vol: 5, issue: 5, pages: e10533, 2010

Type: Journal article - Journal article

DOI: 10.1371/journal.pone.0010533

Identification of CD8(+) T Cell Epitopes in the West Nile Virus Polyprotein by Reverse-Immunology Using NetCTL

Larsen, Mette Voldby ; Lelic, A. ; Parsons, R. ; Nielsen, Morten ; Hoof, I. ; Lamberth, K. ; Loeb, M.B. ; Buus, S. ; Bramson, J. ; Lund, Ole

in journal: P L o S One (ISSN: 1932-6203) (DOI: http://dx.doi.org/10.1371/journal.pone.0012697), vol: 5, issue: 9, 2010

Type: Journal article - Journal article

DOI: 10.1371/journal.pone.0012697

NetCTLpan: pan-specific MHC class I pathway epitope predictions

Stranzl, Thomas ; Larsen, Mette Voldby ; Lundegaard, Claus ; Nielsen, Morten

in journal: Immunogenetics (ISSN: 0093-7711) (DOI: http://dx.doi.org/10.1007/s00251-010-0441-4), vol: 62, issue: 6, pages: 357-368, 2010

Type: Journal article - Journal article

DOI: 10.1007/s00251-010-0441-4

Degree of Predicted Minor Histocompatibility Antigen Mismatch Correlates with Poorer Clinical Outcomes of Nonmyeloablative Allogeneic Hematopoietic Cell Transplantation

Larsen, Malene Erup ; Kornblit, B ; Larsen, Mette Voldby ; Masmas, TN ; Nielsen, Morten ; Thiim, Martin Hansen ; Garred, P ; Stryhn, A ; Lund, Ole ; Buus, S ; Vindelov, L

in journal: Blood & Marrow Transplant Newsletter (ISSN: 1525-6855) (DOI: http://dx.doi.org/10.1016/j.bbmt.2010.03.022), vol: 16, issue: 10, 2010

Type: Journal article - Journal article

DOI: 10.1016/j.bbmt.2010.03.022

Systematic Characterisation of Cellular Localisation and Expression Profiles of Proteins Containing MHC Ligands

Juncker, Agnieszka ; Larsen, Mette Voldby ; Weinhold, Nils ; Nielsen, Morten ; Brunak, Søren ; Lund, Ole

in journal: P L o S One (ISSN: 1932-6203) (DOI: http://dx.doi.org/10.1371/journal.pone.0007448), vol: 4, issue: 10, 2009

Type: Journal article - Journal article

DOI: 10.1371/journal.pone.0007448

Genetic Variation in AKAP13 Is Associated with Increased Risk of Relapse after Allogeneic Hematopoietic Cell Transplantation Following Non-Myeloablative Conditioning

Kornblit, B. ; Masmas, T. ; Madsen, H. O. ; Larsen, Mette Voldby ; Stryhn, A. ; Buus, S. ; Garred, P. ; Vindelov, L.

in journal: Blood (ISSN: 0006-4971), vol: 112, issue: 11, pages: 1118-1119, 2008

Type: Conference abstract in journal - Conference abstract in journal

Broadly Immunogenic HLA Class I Supertype-Restricted Elite CTL Epitopes Recognized in a Diverse Population Infected with Different HIV-1 Subtypes

Pérez, Carina L ; Larsen, Mette Voldby ; Gustafsson, Rasmus ; Norström, Melissa M ; Atlas, Ann ; Nixon, Douglas F ; Nielsen, Morten ; Lund, Ole ; Karlsson, Annika C

in journal: Journal of Immunology (ISSN: 0022-1767), vol: 180, issue: 7, pages: 5092-5100, 2008

Type: Journal article - Journal article

CTL epitopes for influenza A including the H5N1 bird flu; genome-, pathogen-, and HLA-wide screening

Wang, M.J. ; Lamberth, K. ; Harndahl, M. ; Roder, G. ; Stryhn, A. ; Larsen, Mette Voldby ; Nielsen, Morten ; Lundegaard, Claus ; Tang, Sheila Tuyet ; Dziegiel, M.H. ; Rosenkvist, J. ; Pedersen, A.E. ; Buus, Søren ; Claesson, M.H. ; Lund, Ole

in journal: Vaccine (ISSN: 0264-410X) (DOI: http://dx.doi.org/10.1016/j.vaccine.2006.12.038), vol: 25, issue: 15, pages: 2823-2831, 2007

Type: Journal article - Journal article

DOI: 10.1016/j.vaccine.2006.12.038

Prediction of T-cell Epitopes for Therapeutic and Prophylactic Vaccines

Larsen, Mette Voldby ; Brunak, Søren ; Lund, Ole

Type: Ph.d. thesis - Ph.d. thesis

Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction

Larsen, Mette Voldby ; Lundegaard, Claus ; Lamberth, K. ; Buus, S. ; Lund, Ole ; Nielsen, Morten

in journal: BMC Bioinformatics (ISSN: 1471-2105) (DOI: http://dx.doi.org/10.1186/1471-2105-8-424), vol: 8, pages: 424, 2007

Type: Journal article - Journal article

DOI: 10.1186/1471-2105-8-424